PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS73104.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family MYB_related
Protein Properties Length: 272aa    MW: 30217.1 Da    PI: 8.5893
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS73104.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.51.2e-11556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+e l  +v+++G g Wk I r          R+  ++k++w+++
       EPS73104.1  5 KQKWTSEEEEALRAGVAKHGAGKWKNIQRDPEfnhllFARSNIDLKDKWRNL 56
                     79******************************99*9977***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.074161IPR017930Myb domain
SuperFamilySSF466892.69E-14258IPR009057Homeodomain-like
SMARTSM007172.6E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-13456IPR009057Homeodomain-like
PfamPF002493.0E-8556IPR001005SANT/Myb domain
CDDcd116601.98E-20656No hitNo description
SMARTSM005261.3E-10115180IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150419.443117185IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.104.1E-12118188IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF466892.69E-14119152IPR009057Homeodomain-like
PfamPF005386.1E-7120178IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV AKHGAGKWKN IQRDPEFNHL LFARSNIDLK DKWRNLSVAS  60
GQGPRDKSKT PKAKTGTGEL LAIQYPASQT CAPSSLDPSA DVVVIDDSLR PFPEGSNASK  120
YNALIYAALS SLEEPHGSEC SAIAAFIEQR QDVPQNFKRL LSSRLRKLVQ QDKLEKVQNC  180
YRLKKRDDAA KPRDFPPKQL FTTAAPYLRN AKHPPEDTIE NVAVAAAYKI AEAENKSFVA  240
AEAVKEAERV SRMAEDQDSL LKLLQDCVEQ LS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078025.11e-128PREDICTED: telomere repeat-binding factor 4-like
TrEMBLS8D0080.0S8D008_9LAMI; Uncharacterized protein (Fragment)
STRINGPOPTR_0006s14940.13e-86(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.14e-48MYB_related family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]